Timeline
05/05/09:
- 16:02 Changeset [7652] by
- Fix bug introduced in r7651. Escaped a wrong string in
- 15:22 Changeset [7651] by
- Special characters used in Lucene need to be escaped in query strings. Use …
- 13:47 Changeset [7650] by
- Add info log with duration it takes to finish cross ref call. Addresses …
- 12:41 Ticket #1301 (removing crosspubbed article doesn't clean up after itself) created by
- crosspublish an article into your journal add your crosspubbed article to …
- 12:25 Ticket #1283 (Simple Search colon character causes Site Error) reopened by
- 12:24 Ticket #1281 (Competing Interests Sequence Error) reopened by
- This is fixed for Notes but not Comments. Tested again at: …
- 12:23 Ticket #1296 (Author Contributions not appearing in article 'jump to' list) reopened by
- Author Contributions are now annotatable. Unfortunately the annotation is …
- 12:18 Ticket #1300 (Add INFO logging for remote procedure call to CrossRef in Publish ...) created by
- Add some logging to measure the time it is taking to call CrossRef? in the …
- 12:14 Changeset [7649] by
- Remove permission checks from annotation feed. Results shouldn't depend if …
- 12:01 Changeset [7648] by
- Gracefully handle null bodies in annotation feed.
- 10:54 Ticket #1299 (Annotation Feed - Null Pointer Exception) created by
- When viewing the PLoS One feed there is a null pointer exception …
05/04/09:
- 17:38 Ticket #1284 (Ratings not showing in Annotation Feed) reopened by
- Ratings only show up in the article annotation feed if you're logged in to …
- 17:15 Ticket #1284 (Ratings not showing in Annotation Feed) closed by
- fixed: Verified that ratings are displayed in the article annotation feed.
- 16:50 Ticket #1283 (Simple Search colon character causes Site Error) closed by
- fixed: Verified that special characters in search are forwarded to search error …
- 16:47 Ticket #1294 (Error in Genetics Template for Simple Search) closed by
- fixed: Verified that the search results appear correctly.
- 13:37 Changeset [7647] by
- Adding Mendeley as a social bookmarking link
- 12:29 Changeset [7646] by
- Improved the simple search form validation. If bad control characters are …
- 10:58 Changeset [7645] by
- If there is no search abstract we are still returning a blank string …
- 10:01 Ticket #1277 (Report a Concern / Respond to this Posting Bug) closed by
- fixed: Verified that canceling the Report a concern or Respond to this …
- 09:54 Ticket #1290 (Typo on Advanced Search page) closed by
- fixed: Categorically verified that the typo has been fixed.
- 09:32 Changeset [7644] by
- Add ratings and trackbacks to annotation feed. Addresses #1284 and #1288
05/01/09:
- 16:34 Ticket #1264 (ArticleAnnotationCache does not respect TTL) closed by
- fixed: confirmed
- 14:19 Ticket #1298 (Cannot access install scripts for ambra) created by
- According to the SingleBoxInstall? page …
- 12:42 Changeset [7643] by
- Correcting Typo. Catogories was mispelled. References #1290
- 08:56 Ticket #1293 (Right Nav Bar Breaking on Second Line) closed by
- fixed: Verified that the jump to links display 25 characters which keeps …
- 08:53 Ticket #1297 (Author Contributions section not appearing in article 'jump to' list) closed by
- fixed: Verified that 'Author Contributions' is appearing correctly in the jump to …
04/30/09:
- 17:31 Changeset [7642] by
- This improves how the responsePanel cleans up after itself. It will no …
- 17:07 Changeset [7641] by
- Further testing of the article page showed that the max width of the right …
- 16:34 Changeset [7640] by
- Correcting typo in the testing framework. This should have been part of …
- 15:44 Changeset [7639] by
- Added the 'author contribution' section to the article jump to list. …
- 15:28 Ticket #1287 (User First and Last Name do not show in the feed.) closed by
- invalid: FireFox? Feed View does not show all the fields. To verify the User Name, …
- 15:27 Ticket #1289 (Formal Corrections and Minor Corrections not appearing in Annotation Feed.) closed by
- worksforme
- 15:25 Ticket #1285 (Note Across the DOI at the Bottom of Figure and Text Below Figure Cause ...) closed by
- fixed: Verified that a user cannot select the figure text and figure DOI. This …
- 15:23 Ticket #1296 (Author Contributions not appearing in article 'jump to' list) closed by
- fixed: Verified that the text after the Author Contributions section can be …
- 15:22 Ticket #1297 (Author Contributions section not appearing in article 'jump to' list) created by
- Author Contributions is a section header and should appear in the article …
- 15:15 Ticket #1295 (Note Disappearing when selection starts at the end of the Figure Text ...) closed by
- fixed: Verified that a user cannot select text that spans different sections of …
- 13:48 Ticket #1280 (Report a Concern on a Comment Input Validation Fails) closed by
- fixed: Verified that the report a concern, reply to comment, rating and note body …
- 13:45 Ticket #1292 (Input Size message and incorrect Competing Interests message) closed by
- fixed: Verified that the error message is correctly indicating the missing text, …
- 13:44 Ticket #1279 (Create Annotation Body Validation Fails) closed by
- fixed: Verified that the error message is correctly indicating the missing text, …
- 12:27 Ticket #1282 (Pop-ups showing in right hand column) closed by
- fixed: Verified that selecting text in the article RHC doesn't display the …
- 12:23 Ticket #1281 (Competing Interests Sequence Error) closed by
- fixed: Verified that the competing interest statement text is not saved when the …
- 12:21 Ticket #1276 (Double Annotation Bug) closed by
- fixed: Verified that the competing interest statement text is not saved when the …
- 12:07 Ticket #1275 (Trap currentIssue in browseVolume.ftl) closed by
- fixed: Verified that currentIssue is trapped. Added to the plosone …
- 09:34 Changeset [7638] by
- Annotating text of author contributions allows you to select text; when …
04/29/09:
- 16:27 Ticket #1296 (Author Contributions not appearing in article 'jump to' list) created by
- Annotating text of author contributions allows you to select text; when …
- 16:25 Ticket #1295 (Note Disappearing when selection starts at the end of the Figure Text ...) created by
- Note disappearing. Added a note spanning the end of the figure legend text …
- 16:23 Ticket #1294 (Error in Genetics Template for Simple Search) created by
- When I use simple search, each entry has an ellipsis (...) underneath, …
- 15:49 Changeset [7637] by
- Fixing the ArticleXMLUtilsTest. This should have been included in r7632 …
- 15:44 Changeset [7636] by
- Reducing the maximum width of the items listed in the article table of …
- 15:07 Changeset [7635] by
- Improved annotation dialog initlization. Competing Interest statements …
- 14:45 Changeset [7634] by
- Adding length input verification to the create flag action. References …
- 14:39 Changeset [7633] by
- Changed the logic of the annotation context menu. Now when the selection …
- 14:33 Ticket #1293 (Right Nav Bar Breaking on Second Line) created by
- Some of the links in the Right Nav Bar are breaking on the second line, …
- 14:28 Ticket #1292 (Input Size message and incorrect Competing Interests message) created by
- When entering more than 64,000 characters in the body field of an …
- 14:25 Ticket #1291 (Wrong selection error in Authors list and References list) created by
- Attempting to annotate text in the References list brings up the wrong (I …
- 14:14 Ticket #1290 (Typo on Advanced Search page) created by
- I spotted a typo on the Advanced Search: Under Subject Categories: …
- 14:11 Changeset [7632] by
- There are a number of issues surrpounding annotations created around …
- 14:03 Ticket #1289 (Formal Corrections and Minor Corrections not appearing in Annotation Feed.) created by
- Formal corrections and minor corrections do not appear in the annotation …
- 13:58 Changeset [7631] by
- Fixes a small issue related where the competing interest statement field …
- 13:56 Ticket #1288 (Trackbacks not showing in the feed) created by
- Trackbacks aren't showing up in the annotation feed for PLoS ONE. Tested …
- 13:54 Ticket #1287 (User First and Last Name do not show in the feed.) created by
- Name of user does not appear next to any of the notes/comments/replies …
- 13:51 Ticket #1286 (Notes Across Different Sections of Text Should Not Be Allowed) created by
- Adding a note across different sections of text is allowed: should not be …
- 13:46 Ticket #1285 (Note Across the DOI at the Bottom of Figure and Text Below Figure Cause ...) created by
- Select the any text below a figure, and take the selection area up to the …
- 13:36 Ticket #1284 (Ratings not showing in Annotation Feed) created by
- Ratings aren't showing up in the annotation feed page …
- 13:13 Ticket #1283 (Simple Search colon character causes Site Error) created by
- If you include a colon in the search string there is a site error. …
- 13:10 Ticket #1282 (Pop-ups showing in right hand column) created by
- Remove any pop-ups showing in the right hand column. Nothing may be …
- 13:03 Ticket #1281 (Competing Interests Sequence Error) created by
- When posting a comment or note, if I select the "Yes I have competing …
- 13:01 Ticket #1280 (Report a Concern on a Comment Input Validation Fails) created by
- When "reporting a concern" about a posted comment, I entered more than …
- 12:59 Ticket #1279 (Create Annotation Body Validation Fails) created by
- When verifying that error messages appear correctly when each of the …
- 11:46 Ticket #1215 (Move addArticle and removeArticle methods into a service class) closed by
- fixed: Confirmed that the addArticle and removeArticle methods were made private …
- 11:26 Ticket #1265 (Admin Panel Site Error when creating Biology Issues) closed by
- fixed: Verified that bad URIs are trapped correctly for volumes, issues and …
- 10:28 Ticket #1178 (simpleSearch.action search results include incorrect HTML) closed by
- fixed: Confirmed that the search results are displayed correctly.
04/28/09:
- 17:11 Ticket #1046 (Remove obsolete migration) closed by
- fixed: Confirmed that the search and citation migrations aren't running at …
- 17:00 Ticket #1278 (Google Scholar: change author list format in extended feed) created by
- currently, in the extended feed, we list all authors like so: […] …
- 15:55 Ticket #1277 (Report a Concern / Respond to this Posting Bug) created by
- If the user clicks on Report a Concern or Respond to this Posting. …
- 15:46 Ticket #1276 (Double Annotation Bug) created by
- If you create an annotation with a competing interest statement and then …
- 13:52 Ticket #1270 (freemarker.cache using incorrect directory) closed by
- wontfix: Closing ticket as won't fix.
- 13:30 Ticket #1273 (Serialization error on Results class during a search) closed by
- fixed: Verified that the search results are returning properly.
- 13:25 Changeset [7630] by
- If currentIssue is undefined, this page would error out. This resolves …
- 13:18 Ticket #1245 (Error parsing query) closed by
- fixed: Verified that the URI is being validated: […]
- 12:23 Ticket #1275 (Trap currentIssue in browseVolume.ftl) created by
- If the current issue isn't defined for a journal, it shouldn't throw an …
- 12:21 Ticket #1271 (Expression field is undefined in plosone global_head.ftl) closed by
- wontfix: Fixed with a template merge.
- 11:58 Ticket #1268 (Can't page through search results - key not Serializable) closed by
- duplicate: Duplicate of #1273
- 11:52 Changeset [7629] by
- EhCache? throws an exception from getValue for items that are not …
- 09:59 Changeset [7628] by
- Fix unit test. Should have been part of r7625
- 09:54 Ticket #1274 (serialization errors in ambra.log) created by
- seen on demo.live.093 ec2 instance - is this a BrowseCache? key? […]
04/27/09:
- 18:18 Ticket #1273 (Serialization error on Results class during a search) created by
- The org.topazproject.ambra.search.service.Results class has never been …
- 16:05 Ticket #1272 (After ingest and shutdown of embedded mulgara in topazproject mulgara ...) created by
- […]
- 15:46 Changeset [7627] by
- Added additional logging info of null object lookups when allowsNulls = …
- 15:03 Ticket #1163 (Expression thisPage is undefined on first view of article) closed by
- fixed: Verified that the problem doesn't occur for the following action: * A …
- 15:01 Ticket #1271 (Expression field is undefined in plosone global_head.ftl) created by
- […]
- 14:50 Changeset [7626] by
- Added logging of null object lookups when allowsNulls = false.
- 14:43 Ticket #1270 (freemarker.cache using incorrect directory) created by
- On startup, freemarker cache is looking for a directory …
- 14:11 Changeset [7625] by
- Bug fix. Change ordering of feed entries. It was showing 30 oldest entries …
- 14:00 Changeset [7624] by
- Remove JDK 1.6 methods. Build has to work on Java 1.5
- 11:24 Ticket #1266 (Broken template display for invalid static pages instead of 404) closed by
- fixed: Verified that 404 is displayed for incorrect actions.
- 11:20 Changeset [7623] by
- Truncate annotation body to 512 characters and display author's first and …
04/23/09:
- 17:39 Ticket #1269 (publishing articles is slow) created by
- publishArchives.action became slow in version 0.9.1 (or maybe 0.9.0?) up …
- 17:20 Changeset [7622] by
- Javadoc change that should have been part of r7621
- 17:17 Changeset [7621] by
- Rename annotation feed types. References #814
- 13:53 Changeset [7620] by
- -Removed old migrators -browseCache bean initialized to restrict cache …
04/22/09:
- 14:43 Changeset [7619] by
- There were numerous places where we allow correctly formed URIs to be …
- 14:36 Changeset [7618] by
- Formatting change.
- 14:31 Changeset [7617] by
- For some reason articleInfoX is being cached with a null value. It is not …
- 14:20 Changeset [7616] by
- This adds various limits to the lenth of a number of form fields. …
04/21/09:
- 15:54 Changeset [7615] by
- Fixes the pageNotFound issue introduced in r6553. Now if a page fails …
04/20/09:
- 11:03 Ticket #1268 (Can't page through search results - key not Serializable) created by
- Search on a query (e.g. 'gene') that returns multiple search result …
- 10:51 Ticket #1258 (UI Nav Bar reduce list length) closed by
- fixed: Confirmed that the 'ToC Jump to' links are truncated at 30 characters.
- 10:45 Ticket #1257 (UI Messaging when no Blog entries are found in ALM) closed by
- fixed: Confirmed that the text has been removed if no blog entries are found.
04/19/09:
- 13:22 Changeset [7614] by
- Clean up the code clean-up. Fix some stuff done in r7600
04/17/09:
- 16:42 Changeset [7613] by
- Redesign annotation feeds to include replies. - Cache annotation feeds …
- 16:17 Ticket #1267 (CODE_ARTICLE_TITLE: pmed.1000053, pmed.1000055) created by
- CODE_ARTICLE_TITLE string shows in the browser header bar two more …
- 16:14 Ticket #1266 (Broken template display for invalid static pages instead of 404) created by
- When viewing a page that doesn't exist, the template display is broken. It …
- 16:07 Ticket #1265 (Admin Panel Site Error when creating Biology Issues) created by
- creating back issues for Bio, I accidentally hit enter far too early, …
- 14:07 Changeset [7612] by
- Remove unused class.
- 13:14 Ticket #1264 (ArticleAnnotationCache does not respect TTL) created by
- when we upgraded to 0.9.2, some changes were made to the article XSL …
- 12:33 Changeset [7611] by
- Use unmanaged blobs to store annotation bodies. Unmanaged blobs are …
- 10:07 Ticket #1126 (add plos article type to extended feed) closed by
- fixed: verified!
04/16/09:
- 16:38 Changeset [7610] by
- VJMF is an eternal cache. It will cache the error that results from trying …
- 16:38 Changeset [7609] by
- Removed second article type that was showing up in the extended feed. …
04/14/09:
- 15:31 Changeset [7608] by
- A bug was introducted in r7604. The flushStore method needs to be public …
- 09:57 Changeset [7607] by
- Reduced and adjusted the margin and padding on ordered and unordered lists …
- 09:53 Changeset [7606] by
- The textual part of links in the table of contents of articles were …
04/13/09:
- 14:13 Changeset [7605] by
- update releaseNotes.ftl for 0.9.3 with new stanza, and expected changes. …
- 11:58 Changeset [7604] by
- Moving the addArticle and removeArticle methods into a service class and …
04/10/09:
- 15:39 Changeset [7603] by
- Replace deprecated getCurrentJournal() method.
- 15:32 Changeset [7602] by
- Suppressing the "There are no blog entries" text when there are no blog …
- 11:39 Changeset [7601] by
- Moving some variable definitions templates to be included into templates …
- 10:15 Changeset [7600] by
- Code cleanup: - Use StringBuilder? instead of String concatenation for …
04/08/09:
- 19:50 Changeset [7599] by
- Somewhat major update to cache management. I) Altered cache management …
- 15:47 Changeset [7598] by
- rome-1.0 final is out. We can stop using RC1. Note: We should eventually …
- 15:33 Changeset [7597] by
- Code cleanup: Remove TextUtilsExtended?. Only few of it's methods were used …
- 15:22 Changeset [7596] by
- Validate URIs in action before passing them to low-level routines. …
- 13:29 Changeset [7595] by
- [maven-release-plugin] prepare for next development iteration
- 13:29 Changeset [7594] by
- [maven-release-plugin] copy for tag the-whole-shebang-0.9.2
- 13:28 Changeset [7593] by
- [maven-release-plugin] prepare release the-whole-shebang-0.9.2
- 11:50 Changeset [7592] by
- When lucene returned a search result without a complete hightlight, we …
- 11:44 Changeset [7591] by
- Spelling correction.
- 11:43 Changeset [7590] by
- Removed second article type that was showing up in the extended feed. …
- 10:08 Milestone 0.9.2 completed
- Minor release for new Ambra features = Ambra = * Update to handle NLM …
04/07/09:
- 13:42 Changeset [7589] by
- Correction of a spelling mistake made in a comment.
04/06/09:
- 22:32 Changeset [7588] by
- Update ProcessFlagActionTest? to work after changes in r7587
- 18:41 Changeset [7587] by
- On #1108 trail - perhaps there is another object that has this as an …
- 18:41 Changeset [7586] by
- Speed up the isEntityLoaded() check by caching entity predicates in an …
- 18:41 Changeset [7585] by
- Entry immutability now enforced by making the set(...) private. Also …
- 17:27 Ticket #1262 (Article Annotation Notification Feed) closed by
- duplicate
- 16:29 Ticket #1263 (UI Implementation for Biology Launch) created by
- PLoS Biology journal on Ambra * UI mockups. * Build PLoS Biology homepage …
- 16:25 Ticket #1262 (Article Annotation Notification Feed) created by
- A new annotation feed including new parent and child annotions per journal …
- 16:25 Ticket #1261 (Standardized Performance Testing) created by
- Standardize Benchmarks and Environments for Performance Testing * …
- 16:22 Changeset [7584] by
- At the end of the processing, check if body of annotations that has just …
- 16:21 Ticket #1260 (Multiple Scopus Citations in Cited By Links) created by
- Display multiple Scopus Cited By links * If an article has two Scopus …
- 16:03 Ticket #1259 (Google Scholar link returning incorrect result set) created by
- When I select the GS links (either the related articles or look for …
- 16:00 Ticket #1258 (UI Nav Bar reduce list length) created by
- The nav bar on front matter articles picks up all subject heads -- which …
- 15:54 Ticket #1257 (UI Messaging when no Blog entries are found in ALM) created by
- Blog postings are odd, eg …
- 15:32 Changeset [7583] by
- Remove entities set that can cause serialization problems.isEntityLoaded …
- 12:55 Changeset [7582] by
- Add checks to prevent loosing annotation body during conversion. Addresses …
- 12:02 Ticket #1175 (Adding a note to a hyperlink removes the hyperlink.) closed by
- duplicate: Duplicate of #859
- 10:06 Ticket #1232 (Article URL encoding changing when returning from General Comment form.) closed by
- fixed: Verified that the URL encoding is correct after canceling a general …
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