Timeline


and .

04/30/09:

17:31 Changeset [7642] by josowski
This improves how the responsePanel cleans up after itself. It will no …
17:07 Changeset [7641] by josowski
Further testing of the article page showed that the max width of the right …
16:34 Changeset [7640] by josowski
Correcting typo in the testing framework. This should have been part of …
15:44 Changeset [7639] by josowski
Added the 'author contribution' section to the article jump to list. …
15:28 Ticket #1287 (User First and Last Name do not show in the feed.) closed by npeterson
invalid: FireFox? Feed View does not show all the fields. To verify the User Name, …
15:27 Ticket #1289 (Formal Corrections and Minor Corrections not appearing in Annotation Feed.) closed by npeterson
worksforme
15:25 Ticket #1285 (Note Across the DOI at the Bottom of Figure and Text Below Figure Cause ...) closed by rcave
fixed: Verified that a user cannot select the figure text and figure DOI. This …
15:23 Ticket #1296 (Author Contributions not appearing in article 'jump to' list) closed by rcave
fixed: Verified that the text after the Author Contributions section can be …
15:22 Ticket #1297 (Author Contributions section not appearing in article 'jump to' list) created by rcave
Author Contributions is a section header and should appear in the article …
15:15 Ticket #1295 (Note Disappearing when selection starts at the end of the Figure Text ...) closed by rcave
fixed: Verified that a user cannot select text that spans different sections of …
13:48 Ticket #1280 (Report a Concern on a Comment Input Validation Fails) closed by rcave
fixed: Verified that the report a concern, reply to comment, rating and note body …
13:45 Ticket #1292 (Input Size message and incorrect Competing Interests message) closed by rcave
fixed: Verified that the error message is correctly indicating the missing text, …
13:44 Ticket #1279 (Create Annotation Body Validation Fails) closed by rcave
fixed: Verified that the error message is correctly indicating the missing text, …
12:27 Ticket #1282 (Pop-ups showing in right hand column) closed by rcave
fixed: Verified that selecting text in the article RHC doesn't display the …
12:23 Ticket #1281 (Competing Interests Sequence Error) closed by rcave
fixed: Verified that the competing interest statement text is not saved when the …
12:21 Ticket #1276 (Double Annotation Bug) closed by rcave
fixed: Verified that the competing interest statement text is not saved when the …
12:07 Ticket #1275 (Trap currentIssue in browseVolume.ftl) closed by rcave
fixed: Verified that currentIssue is trapped. Added to the plosone …
09:34 Changeset [7638] by josowski
Annotating text of author contributions allows you to select text; when …

04/29/09:

16:27 Ticket #1296 (Author Contributions not appearing in article 'jump to' list) created by npeterson
Annotating text of author contributions allows you to select text; when …
16:25 Ticket #1295 (Note Disappearing when selection starts at the end of the Figure Text ...) created by npeterson
Note disappearing. Added a note spanning the end of the figure legend text …
16:23 Ticket #1294 (Error in Genetics Template for Simple Search) created by npeterson
When I use simple search, each entry has an ellipsis (...) underneath, …
15:49 Changeset [7637] by josowski
Fixing the ArticleXMLUtilsTest. This should have been included in r7632
15:44 Changeset [7636] by josowski
Reducing the maximum width of the items listed in the article table of …
15:07 Changeset [7635] by josowski
Improved annotation dialog initlization. Competing Interest statements …
14:45 Changeset [7634] by josowski
Adding length input verification to the create flag action. References …
14:39 Changeset [7633] by josowski
Changed the logic of the annotation context menu. Now when the selection …
14:33 Ticket #1293 (Right Nav Bar Breaking on Second Line) created by npeterson
Some of the links in the Right Nav Bar are breaking on the second line, …
14:28 Ticket #1292 (Input Size message and incorrect Competing Interests message) created by npeterson
When entering more than 64,000 characters in the body field of an …
14:25 Ticket #1291 (Wrong selection error in Authors list and References list) created by npeterson
Attempting to annotate text in the References list brings up the wrong (I …
14:14 Ticket #1290 (Typo on Advanced Search page) created by npeterson
I spotted a typo on the Advanced Search: Under Subject Categories: …
14:11 Changeset [7632] by josowski
There are a number of issues surrpounding annotations created around …
14:03 Ticket #1289 (Formal Corrections and Minor Corrections not appearing in Annotation Feed.) created by npeterson
Formal corrections and minor corrections do not appear in the annotation …
13:58 Changeset [7631] by josowski
Fixes a small issue related where the competing interest statement field …
13:56 Ticket #1288 (Trackbacks not showing in the feed) created by npeterson
Trackbacks aren't showing up in the annotation feed for PLoS ONE. Tested …
13:54 Ticket #1287 (User First and Last Name do not show in the feed.) created by npeterson
Name of user does not appear next to any of the notes/comments/replies …
13:51 Ticket #1286 (Notes Across Different Sections of Text Should Not Be Allowed) created by npeterson
Adding a note across different sections of text is allowed: should not be …
13:46 Ticket #1285 (Note Across the DOI at the Bottom of Figure and Text Below Figure Cause ...) created by npeterson
Select the any text below a figure, and take the selection area up to the …
13:36 Ticket #1284 (Ratings not showing in Annotation Feed) created by npeterson
Ratings aren't showing up in the annotation feed page …
13:13 Ticket #1283 (Simple Search colon character causes Site Error) created by npeterson
If you include a colon in the search string there is a site error. …
13:10 Ticket #1282 (Pop-ups showing in right hand column) created by npeterson
Remove any pop-ups showing in the right hand column. Nothing may be …
13:03 Ticket #1281 (Competing Interests Sequence Error) created by npeterson
When posting a comment or note, if I select the "Yes I have competing …
13:01 Ticket #1280 (Report a Concern on a Comment Input Validation Fails) created by npeterson
When "reporting a concern" about a posted comment, I entered more than …
12:59 Ticket #1279 (Create Annotation Body Validation Fails) created by npeterson
When verifying that error messages appear correctly when each of the …
11:46 Ticket #1215 (Move addArticle and removeArticle methods into a service class) closed by rcave
fixed: Confirmed that the addArticle and removeArticle methods were made private …
11:26 Ticket #1265 (Admin Panel Site Error when creating Biology Issues) closed by rcave
fixed: Verified that bad URIs are trapped correctly for volumes, issues and …
10:28 Ticket #1178 (simpleSearch.action search results include incorrect HTML) closed by rcave
fixed: Confirmed that the search results are displayed correctly.

04/28/09:

17:11 Ticket #1046 (Remove obsolete migration) closed by rcave
fixed: Confirmed that the search and citation migrations aren't running at …
17:00 Ticket #1278 (Google Scholar: change author list format in extended feed) created by russ
currently, in the extended feed, we list all authors like so: […] …
15:55 Ticket #1277 (Report a Concern / Respond to this Posting Bug) created by josowski
If the user clicks on Report a Concern or Respond to this Posting. …
15:46 Ticket #1276 (Double Annotation Bug) created by josowski
If you create an annotation with a competing interest statement and then …
13:52 Ticket #1270 (freemarker.cache using incorrect directory) closed by rcave
wontfix: Closing ticket as won't fix.
13:30 Ticket #1273 (Serialization error on Results class during a search) closed by rcave
fixed: Verified that the search results are returning properly.
13:25 Changeset [7630] by josowski
If currentIssue is undefined, this page would error out. This resolves …
13:18 Ticket #1245 (Error parsing query) closed by rcave
fixed: Verified that the URI is being validated: […]
12:23 Ticket #1275 (Trap currentIssue in browseVolume.ftl) created by rcave
If the current issue isn't defined for a journal, it shouldn't throw an …
12:21 Ticket #1271 (Expression field is undefined in plosone global_head.ftl) closed by rcave
wontfix: Fixed with a template merge.
11:58 Ticket #1268 (Can't page through search results - key not Serializable) closed by rcave
duplicate: Duplicate of #1273
11:52 Changeset [7629] by wtoconnor
EhCache? throws an exception from getValue for items that are not …
09:59 Changeset [7628] by dragisak
Fix unit test. Should have been part of r7625
09:54 Ticket #1274 (serialization errors in ambra.log) created by russ
seen on demo.live.093 ec2 instance - is this a BrowseCache? key? […]

04/27/09:

18:18 Ticket #1273 (Serialization error on Results class during a search) created by ssterling
The org.topazproject.ambra.search.service.Results class has never been …
16:05 Ticket #1272 (After ingest and shutdown of embedded mulgara in topazproject mulgara ...) created by wtoconnor
[…]
15:46 Changeset [7627] by wtoconnor
Added additional logging info of null object lookups when allowsNulls = …
15:03 Ticket #1163 (Expression thisPage is undefined on first view of article) closed by rcave
fixed: Verified that the problem doesn't occur for the following action: * A …
15:01 Ticket #1271 (Expression field is undefined in plosone global_head.ftl) created by rcave
[…]
14:50 Changeset [7626] by wtoconnor
Added logging of null object lookups when allowsNulls = false.
14:43 Ticket #1270 (freemarker.cache using incorrect directory) created by rcave
On startup, freemarker cache is looking for a directory …
14:11 Changeset [7625] by dragisak
Bug fix. Change ordering of feed entries. It was showing 30 oldest entries …
14:00 Changeset [7624] by dragisak
Remove JDK 1.6 methods. Build has to work on Java 1.5
11:24 Ticket #1266 (Broken template display for invalid static pages instead of 404) closed by rcave
fixed: Verified that 404 is displayed for incorrect actions.
11:20 Changeset [7623] by dragisak
Truncate annotation body to 512 characters and display author's first and …

04/23/09:

17:39 Ticket #1269 (publishing articles is slow) created by russ
publishArchives.action became slow in version 0.9.1 (or maybe 0.9.0?) up …
17:20 Changeset [7622] by dragisak
Javadoc change that should have been part of r7621
17:17 Changeset [7621] by dragisak
Rename annotation feed types. References #814
13:53 Changeset [7620] by wtoconnor
-Removed old migrators -browseCache bean initialized to restrict cache …

04/22/09:

14:43 Changeset [7619] by wtoconnor
There were numerous places where we allow correctly formed URIs to be …
14:36 Changeset [7618] by wtoconnor
Formatting change.
14:31 Changeset [7617] by wtoconnor
For some reason articleInfoX is being cached with a null value. It is not …
14:20 Changeset [7616] by josowski
This adds various limits to the lenth of a number of form fields. …

04/21/09:

15:54 Changeset [7615] by josowski
Fixes the pageNotFound issue introduced in r6553. Now if a page fails …

04/20/09:

11:03 Ticket #1268 (Can't page through search results - key not Serializable) created by rcave
Search on a query (e.g. 'gene') that returns multiple search result …
10:51 Ticket #1258 (UI Nav Bar reduce list length) closed by rcave
fixed: Confirmed that the 'ToC Jump to' links are truncated at 30 characters.
10:45 Ticket #1257 (UI Messaging when no Blog entries are found in ALM) closed by rcave
fixed: Confirmed that the text has been removed if no blog entries are found.

04/19/09:

13:22 Changeset [7614] by dragisak
Clean up the code clean-up. Fix some stuff done in r7600

04/17/09:

16:42 Changeset [7613] by dragisak
Redesign annotation feeds to include replies. - Cache annotation feeds …
16:17 Ticket #1267 (CODE_ARTICLE_TITLE: pmed.1000053, pmed.1000055) created by npeterson
CODE_ARTICLE_TITLE string shows in the browser header bar two more …
16:14 Ticket #1266 (Broken template display for invalid static pages instead of 404) created by npeterson
When viewing a page that doesn't exist, the template display is broken. It …
16:07 Ticket #1265 (Admin Panel Site Error when creating Biology Issues) created by npeterson
creating back issues for Bio, I accidentally hit enter far too early, …
14:07 Changeset [7612] by dragisak
Remove unused class.
13:14 Ticket #1264 (ArticleAnnotationCache does not respect TTL) created by russ
when we upgraded to 0.9.2, some changes were made to the article XSL …
12:33 Changeset [7611] by dragisak
Use unmanaged blobs to store annotation bodies. Unmanaged blobs are …
10:07 Ticket #1126 (add plos article type to extended feed) closed by russ
fixed: verified!

04/16/09:

16:38 Changeset [7610] by wtoconnor
VJMF is an eternal cache. It will cache the error that results from trying …
16:38 Changeset [7609] by wtoconnor
Removed second article type that was showing up in the extended feed. …

04/14/09:

15:31 Changeset [7608] by josowski
A bug was introducted in r7604. The flushStore method needs to be public …
09:57 Changeset [7607] by stoomey
Reduced and adjusted the margin and padding on ordered and unordered lists …
09:53 Changeset [7606] by josowski
The textual part of links in the table of contents of articles were …

04/13/09:

14:13 Changeset [7605] by russ
update releaseNotes.ftl for 0.9.3 with new stanza, and expected changes. …
11:58 Changeset [7604] by josowski
Moving the addArticle and removeArticle methods into a service class and …

04/10/09:

15:39 Changeset [7603] by dragisak
Replace deprecated getCurrentJournal() method.
15:32 Changeset [7602] by josowski
Suppressing the "There are no blog entries" text when there are no blog …
11:39 Changeset [7601] by josowski
Moving some variable definitions templates to be included into templates …
10:15 Changeset [7600] by dragisak
Code cleanup: - Use StringBuilder? instead of String concatenation for …

04/08/09:

19:50 Changeset [7599] by pradeep
Somewhat major update to cache management. I) Altered cache management …
15:47 Changeset [7598] by dragisak
rome-1.0 final is out. We can stop using RC1. Note: We should eventually …
15:33 Changeset [7597] by dragisak
Code cleanup: Remove TextUtilsExtended?. Only few of it's methods were used …
15:22 Changeset [7596] by dragisak
Validate URIs in action before passing them to low-level routines. …
13:29 Changeset [7595] by dragisak
[maven-release-plugin] prepare for next development iteration
13:29 Changeset [7594] by dragisak
[maven-release-plugin] copy for tag the-whole-shebang-0.9.2
13:28 Changeset [7593] by dragisak
[maven-release-plugin] prepare release the-whole-shebang-0.9.2
11:50 Changeset [7592] by josowski
When lucene returned a search result without a complete hightlight, we …
11:44 Changeset [7591] by wtoconnor
Spelling correction.
11:43 Changeset [7590] by wtoconnor
Removed second article type that was showing up in the extended feed. …
10:08 Milestone 0.9.2 completed
Minor release for new Ambra features = Ambra = * Update to handle NLM …

04/07/09:

13:42 Changeset [7589] by josowski
Correction of a spelling mistake made in a comment.

04/06/09:

22:32 Changeset [7588] by dragisak
Update ProcessFlagActionTest? to work after changes in r7587
18:41 Changeset [7587] by pradeep
On #1108 trail - perhaps there is another object that has this as an …
18:41 Changeset [7586] by pradeep
Speed up the isEntityLoaded() check by caching entity predicates in an …
18:41 Changeset [7585] by pradeep
Entry immutability now enforced by making the set(...) private. Also …
17:27 Ticket #1262 (Article Annotation Notification Feed) closed by npeterson
duplicate
16:29 Ticket #1263 (UI Implementation for Biology Launch) created by npeterson
PLoS Biology journal on Ambra * UI mockups. * Build PLoS Biology homepage …
16:25 Ticket #1262 (Article Annotation Notification Feed) created by npeterson
A new annotation feed including new parent and child annotions per journal …
16:25 Ticket #1261 (Standardized Performance Testing) created by npeterson
Standardize Benchmarks and Environments for Performance Testing * …
16:22 Changeset [7584] by dragisak
At the end of the processing, check if body of annotations that has just …
16:21 Ticket #1260 (Multiple Scopus Citations in Cited By Links) created by npeterson
Display multiple Scopus Cited By links * If an article has two Scopus …
16:03 Ticket #1259 (Google Scholar link returning incorrect result set) created by npeterson
When I select the GS links (either the related articles or look for …
16:00 Ticket #1258 (UI Nav Bar reduce list length) created by npeterson
The nav bar on front matter articles picks up all subject heads -- which …
15:54 Ticket #1257 (UI Messaging when no Blog entries are found in ALM) created by npeterson
Blog postings are odd, eg …
15:32 Changeset [7583] by dragisak
Remove entities set that can cause serialization problems.isEntityLoaded …
12:55 Changeset [7582] by dragisak
Add checks to prevent loosing annotation body during conversion. Addresses …
12:02 Ticket #1175 (Adding a note to a hyperlink removes the hyperlink.) closed by rcave
duplicate: Duplicate of #859
10:06 Ticket #1232 (Article URL encoding changing when returning from General Comment form.) closed by rcave
fixed: Verified that the URL encoding is correct after canceling a general …

04/03/09:

16:19 Ticket #1255 (FF2: Info icon displays with the text "Info" overlayed on top.) closed by rcave
fixed: Verified that the info icons appear correctly in FF2.
16:06 Ticket #1247 (Disproportionately large Digg logo on CompBiol articles) closed by rcave
fixed: Verified that the inappropriately large Digg icon is back to normal size.
16:04 Ticket #1250 (Trackbacks not showing up on articles) closed by rcave
fixed: Verified that trackbacks are appearing for all journal templates.
14:12 Ticket #1111 (converted a note to a minor correction - note was deleted) closed by rcave
duplicate: Closing ticket as this is a duplicate to #1108
14:11 Ticket #1240 (404 for dijit_rtl.css on article/comment/related pages) closed by rcave
fixed: Unable to reproduce.
13:33 Ticket #1254 (Remove ability to Advanced Search by date from Ambra) closed by rcave
fixed: Confirmed that a date query such as (date:[2008-01-01+TO+2008-12-31])
11:47 Ticket #1248 (textSearchAtLeastOne is undefined in ...) closed by rcave
fixed: Confirmed that simpleSearch.action and advancedSearch.action are checking …
11:31 Ticket #1246 (Freemarker error with divide by zero) closed by rcave
fixed: Confirmed that simpleSearch.action and advancedSearch.action are checking …
11:20 Ticket #1233 (Adding notes to equation numbers renders the note unreadable) closed by rcave
fixed: Confirmed that the equation number is rendered correctly when a note is …
10:59 Changeset [7581] by russ
change feed link type from rss+xml to atom+xml
10:49 Ticket #564 (browse by subject pages should include the main feed as well as the ...) closed by russ
wontfix: since we are currently only creating static subject area feeds for plosone …
10:49 Ticket #565 (browse pages should have a feedicon and link to the feed as well as a feed ...) closed by russ
wontfix: since we are currently only creating static subject area feeds for plosone …
09:52 Ticket #1256 (Ambra slows down when a peer starts) created by rcave
Include testing peer bootstapping during performance tests. If this is …
09:48 Ticket #1131 (test performance during cache bootstrap) closed by rcave
wontfix: Closing this ticket as we have tested performance during cache bootstrap. …

04/02/09:

17:21 Changeset [7580] by stoomey
Firewalled off the "info" style by making it more specific. As originally …
16:35 Changeset [7579] by josowski
Created a new freemarker directive to handle unexpected characters in …
16:10 Changeset [7578] by stoomey
Modified css to implement the inline image replacement technique described …
14:47 Changeset [7577] by stoomey
Modified html structure and css to implement the inline image replacement …
14:37 Ticket #1255 (FF2: Info icon displays with the text "Info" overlayed on top.) created by stoomey
The info icons that appear next to some of the headers under the Related …
12:24 Changeset [7576] by dragisak
Replace obsolete method.
12:23 Changeset [7575] by dragisak
Remove OTM entities from ArticleInfo? and use Ids instead. They caused …

04/01/09:

17:03 Changeset [7574] by josowski
This covers another use case and should be a catch all for when a user …
16:34 Ticket #1244 (Comments ending in URLs are cut off) closed by rcave
wontfix: This is by design. URLs are truncated at 25 characters (default) so the …
12:09 Changeset [7573] by josowski
Further removing ability to search by dates. Executing any of the date …
10:44 Ticket #1254 (Remove ability to Advanced Search by date from Ambra) created by npeterson
We need to remove the ability for the user to submit any date related …
10:28 Ticket #927 (use overlay journal name as title of admin pages) closed by russ
duplicate: bill fixed this in his 0.9.2 admin UI refactor.
10:03 Changeset [7572] by josowski
Adding a CSS file that dojo looks for, but we don't use. This will a …

03/31/09:

14:44 Changeset [7571] by josowski
Calling:  http://<journal>/search/simpleSearch.action would result in a …
14:40 Changeset [7570] by dragisak
Make sure that system properties are set before each test not just when …
13:01 Changeset [7569] by josowski
The article trackback list was missed in the article page refactor. Here …
10:32 Ticket #1092 (create admin user requires ambra restart to take effect) closed by russ
fixed: un-unverified (dragisa was hitting the wrong vhost)
10:24 Ticket #1092 (create admin user requires ambra restart to take effect) reopened by russ
unverified! this is still broken in production. i suspect it's related to …
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