Ticket #1296 (closed clarification: wontfix)

Opened 16 months ago

Last modified 16 months ago

Author Contributions not appearing in article 'jump to' list

Reported by: npeterson Owned by: rcave
Priority: high Milestone: 0.9.3_rc1
Component: ambra Version: 0.9.3
Keywords: Cc:

Description

Annotating text of author contributions allows you to select text; when you click continue it brings up the old popup reading "this area of text cannot be notated".

We DO want this area of text to be "notatable".

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This is a bug. The problem is due to the 'Author Contributions' section XML not being parsed correctly. It doesn't appear in the Article 'jump to' list or have a 'Top' next to the section title. It looks like we're missing some tag elements.

For an example (scroll just above 'References' section):  http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000359 []

<div xmlns:d="http://purl.org/dc/elements/1.1/" [] xmlns:xs="http://www.w3.org/2001/XMLSchema" [] xmlns:xlink="http://www.w3.org/1999/xlink" [] xmlns:mml="http://www.w3.org/1998/Math/MathML" [] xmlns:aml="http://topazproject.org/aml/" [] class="contributions"> <h3 xpathLocation="noSelect">Author Contributions</h3> <span class="capture-id">Conceived and designed the experiments: YEM NMS. Performed the experiments: YEM NMS. Analyzed the data: YEM NMS. Contributed reagents/materials/analysis tools: YEM NMS. Wrote the paper: YEM NMS.</span> </div>

Change History

Changed 16 months ago by josowski

(In [7638]) Annotating text of author contributions allows you to select text; when you click continue it brings up the old popup reading "this area of text cannot be notated".

This corrects the xpathlocation of author contributions.

References #1296

Changed 16 months ago by josowski

  • owner changed from josowski to rich
  • type changed from defect to clarification

Changed 16 months ago by rcave

  • status changed from new to closed
  • resolution set to fixed
  • summary changed from Author Contributions should be Annotatable to Author Contributions not appearing in article 'jump to' list

Verified that the text after the Author Contributions section can be annotated. Verified that the Author Contributions header cannot be annotated.

Changed 16 months ago by npeterson

  • status changed from closed to reopened
  • resolution fixed deleted
  • type changed from clarification to defect

Author Contributions are now annotatable. Unfortunately the annotation is not anchored to the right place; see screenshot. I highlighted most of the text of the contribs to add a note, and the resulting note highlights a different area of text in the Acknowledgments and References. See pcbi.1000248, "crx to contribs" note.

Changed 16 months ago by npeterson

  • status changed from reopened to new
  • owner changed from rich to josowski

Changed 16 months ago by josowski

(In [7656]) Due to a limitation of the annotation system, Author Contributions can not be annotated.

References #1296

Changed 16 months ago by josowski

(In [7657]) Update to the test file for the recent XSL change. ( r7656 ) References #1296

Changed 16 months ago by josowski

  • owner changed from josowski to rich
  • type changed from defect to clarification

After examining this more deeply, I discovered that author Contributions can not be annotated with the current system, I should have caught this earlier. This round of updates corrects the context menu message, sorry for the confusion.

Changed 16 months ago by npeterson

  • status changed from new to closed
  • resolution set to wontfix
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