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Ticket Summary Status Owner Type Priority Milestone
#57 Create a group profile service. get/set/list profile info for user groups. assigned wtoconnor enhancement unassigned
#66 Wiki page to articles for various interesting applications (RDF Abstract, language translation, etc.) assigned rcave enhancement low
#69 Provide more info to policy in article access-control assigned dragisak enhancement low
#89 Prevent as far as possible automated registration of users. assigned rcave enhancement medium
#124 Ambra email-alert service reopened rcave enhancement unassigned
#145 Implement profile access-control tests assigned josowski defect low
#182 CAS email lookup service needs to be secured assigned josowski enhancement medium
#225 Support different languages in search assigned rcave enhancement low
#345 Move Plos Registration database to Mulgara assigned wtoconnor enhancement unassigned
#407 push email change through to mulgara in emailConfirmationSuccess.action - do not require user to logout and then log back in to propagate change to mulgara assigned wtoconnor defect high
#410 REST based interface for Annotations, Users, Journals, Issues. assigned rcave enhancement critical
#440 Rating content model need fixing. assigned dragisak enhancement low
#467 Remove Publishing application RDF dependency on Topaz URI RDF namespace. assigned dragisak enhancement low
#492 should configure struts2 http (and https) port properties assigned ssterling enhancement low
#494 Need to get author affiliations into mulgara assigned dragisak enhancement low
#509 footnote links for figures with footnotes don't work (also, footnote links are showing the rid instead of the footnote) assigned zmclaughlin defect low
#512 Publishing Application does not create deceased footnote when <contrib> element has deceased="yes" attribute assigned zmclaughlin defect low
#538 Text for copyright statement associated with PLoS feeds in the publishing applicaiton. verify zmclaughlin enhancement low
#567 add 'delete' button to editAnnotation page assigned wtoconnor enhancement high
#593 collab authors do not show up in feed verify zmclaughlin defect medium
#600 handle multiple abstracts correctly on ingest assigned rcave enhancement medium
#605 return user to origination journal after createNewUser or editProfile assigned wtoconnor enhancement high
#614 Email address(es) specified for correspondence with article's creators is not being migrated or ingested assigned ssterling enhancement medium
#618 make article URL human friendly - no escaped characters and as short as possible assigned edickey enhancement medium
#653 trackback spam filter is too conservative assigned ssterling enhancement high
#675 Admin application needs to handle journals better. assigned wtoconnor enhancement unassigned
#690 pull image attribution info from the cover image article and display on TOC page assigned josowski enhancement low
#718 Ambra should register a TemplateExceptionHandler to avoid Exception traces as Results in Templates assigned ssterling defect unassigned
#719 dynamic title for browseIssue assigned rcave enhancement low
#724 automate volume/issue collections on ingest assigned dragisak enhancement low
#741 Struts 2 URLHelper bug assigned ssterling defect low
#781 findArticle.action constructs invalid pubmed search URLs in some cases assigned russ defect medium
#783 Correction annotations outside of <body> element. assigned josowski enhancement low
#854 Ambra Webapp Integration Tests assigned zmclaughlin enhancement critical
#858 add search feature to admin/manageCaches.action assigned wtoconnor enhancement low
#870 annotation in numbered list messes up formatting assigned josowski defect low
#871 Admin interface to change a user's password reopened rcave enhancement unassigned
#872 discussion thread: too many RE:'s assigned russ defect medium
#899 extend DOI resolver to handle supplementary-material assigned rcave enhancement low
#910 Fix and rework user handling assigned rcave defect unassigned
#972 standardize parameter names for actions assigned russ enhancement low
#974 dummy/login page has incorrect help text assigned ssterling defect low
#985 it is impossible to remove all issues from a volume assigned wtoconnor defect unassigned
#990 Invalid annotation URI supplied to listReplyAction assigned josowski defect low
#1018 return a helpful error if user tries to verify their email address twice assigned russ defect medium
#1020 when editing a user through the admin pages, user cache is not cleared for logged in user assigned russ defect medium
#1025 remove need for freemarker config in defaults.xml assigned russ enhancement high
#1042 Tombstone Annotations, Replies and Ratings assigned wtoconnor enhancement unassigned
#1043 Modification of annotations should result in creation of superseded versions. assigned rcave enhancement unassigned
#1051 improve feedCache invalidation verify zmclaughlin enhancement high
#1061 Move generation of xref xml blob outside of Ambra. assigned wtoconnor defect unassigned
#1064 prepare-sip: better handling of tar.gz packages assigned wtoconnor enhancement unassigned
#1077 CrossRef XSL: if no object-id, don't include component assigned zmclaughlin defect unassigned
#1081 Sending abstract to Digg.com in artle_content.ftl assigned josowski enhancement medium
#1091 feed cache keys are not invalidated correctly on article publish verify zmclaughlin defect high
#1116 Change author e-mail to comply with NLM DTD 2.3 assigned lmurdock enhancement low
#1123 genericize prepare-sip and article delete assigned wtoconnor enhancement high
#1132 add ttl and set eternal false for some caches assigned zmclaughlin enhancement critical
#1140 Mulgara query returns UnhandledException Error assigned rcave defect medium
#1142 prepare-sip sax error assigned wtoconnor defect low
#1143 prepare-sip creates a bad MANIFEST.xml assigned wtoconnor defect medium
#1197 unable to order volumes withing a journal assigned wtoconnor enhancement unassigned
#1203 Deletion of an Article does not update Issues list of articles. assigned wtoconnor enhancement medium
#1216 ONE homepage timeout assigned rcave defect high
#1221 adminTop annotation links don't respect journal context assigned wtoconnor defect medium
#1222 editAnnotation action doesn't work in edge case assigned ssterling defect low
#1226 r7512 adds links that don't point to a valid destination verify zmclaughlin defect low
#1227 r7512 adds absolute pathed URLs that don't work in a build verify zmclaughlin defect low
#1239 get rid of config.ambra.platform.cisStartDate assigned josowski enhancement low
#1242 Annotation window positioning after error assigned josowski defect low
#1252 better support for google analytics assigned josowski enhancement unassigned
#1253 improve validation in prepare-sip assigned wtoconnor enhancement low
#1274 serialization errors in ambra.log verify edickey defect medium
#1301 removing crosspubbed article doesn't clean up after itself assigned ssterling defect low
#1302 Filter has not been registered with the session-factory assigned dragisak defect low
#1303 deleting a volume in admin panel orphans the issues assigned wtoconnor defect low
#1307 Add permissions check to annotation feeds assigned rcave enhancement low
#1314 Disable Cache Replication of Puts/Updates assigned zmclaughlin enhancement low
#1335 Upgrade Fedora to 3.x assigned rcave enhancement high
#1341 Elevating or viewing annotations from other journals fail on Manage Flags page assigned edickey defect critical
#1351 users should not be able to create notes on top of links verify zmclaughlin defect medium
#1356 some situations that cause ERRORs and stack traces in ambra.log should be handled differently assigned rcave defect medium
#1357 failure to evict cache key when updating current issue assigned wtoconnor defect medium
#1358 when reingesting an issue image article, the browse cache Issue-info key is not evicted assigned wtoconnor defect critical
#1360 Assigning admin privileges to user with DummuSSO breaks ambra security assigned ssterling defect low
#1364 display bugs with overlapping correction notes assigned russ defect medium
#1366 bad rewrite in urlrewrites.xml assigned russ defect medium
#1380 Change annotation creator data type assigned dragisak enhancement low
#1413 after creating a note that completely overlaps an existing note, two flags are displayed instead of a single flag labeled "2" assigned josowski defect low
#1414 when two notes completely overlap, special characters in the note title are mangled in the popup verify zmclaughlin defect medium
#1415 Allow external configuration of ehcache assigned russ enhancement medium
#1430 Advanced Search fields are not populated as expected after editing an advanced search in the search results query box assigned ssterling defect critical
#1451 Ambra memory leak assigned dragisak defect high
#1452 Inline artitcle text sizing assigned rcave enhancement low
#1458 query string is preserved when clicking links in admin panel assigned wtoconnor defect medium
#1462 ambra init script fails to stop ambra verify zmclaughlin defect medium
#1464 If a complex advanced search is edited and made even more complex and run as a simple search, sometimes results in apache error assigned ssterling defect high
#1467 Backspacing over an Author name in advanced search rather than using the "remove" option will break the ability to edit search after search assigned ssterling defect low
#1470 Package Ambra into a single VMWare Virtual Appliance assigned rcave enhancement high
#1472 Admin Panel Delete and reingestion of articles not behaving correctly - invalidator not clearing out browsecache assigned wtoconnor defect medium
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