root/head/ambra/webapp/src/main/webapp/WEB-INF/applicationContext.xml @ 7613

<?xml version="1.0" encoding="UTF-8"?>
<!--
  Copyright (c) 2006-2009 by Topaz, Inc.
  http://topazproject.org

  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at

      http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
-->
<beans default-autowire="byName"
       xmlns="http://www.springframework.org/schema/beans"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xmlns:util="http://www.springframework.org/schema/util"
       xmlns:aop="http://www.springframework.org/schema/aop"
       xmlns:tx="http://www.springframework.org/schema/tx"
       xsi:schemaLocation="
        http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-2.0.xsd
        http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
        http://www.springframework.org/schema/aop http://www.springframework.org/schema/aop/spring-aop-2.0.xsd
        http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-2.0.xsd">


  <!--  XACML PDPs -->
  <bean id="pdpFactory" class="org.topazproject.ambra.xacml.PDPFactory"/>

  <bean id="permissionsPdp" factory-bean="pdpFactory" factory-method="getPDP">
    <constructor-arg index="0" value="${ambra.services.xacml.permissions.pdpName}"/>
  </bean>

  <bean id="repliesPdp" factory-bean="pdpFactory" factory-method="getPDP">
    <constructor-arg index="0" value="${ambra.services.xacml.replies.pdpName}"/>
  </bean>

  <bean id="annotationsPdp" factory-bean="pdpFactory" factory-method="getPDP">
     <constructor-arg index="0" value="${ambra.services.xacml.annotations.pdpName}"/>
   </bean>

  <bean id="articlesPdp" factory-bean="pdpFactory" factory-method="getPDP">
    <constructor-arg value="${ambra.services.xacml.articles.pdpName}"/>
  </bean>

  <bean id="ratingsPdp" factory-bean="pdpFactory" factory-method="getPDP">
    <constructor-arg value="${ambra.services.xacml.ratings.pdpName}"/>
  </bean>

  <bean id="usersPdp" factory-bean="pdpFactory" factory-method="getPDP">
    <constructor-arg value="${ambra.services.xacml.users.pdpName}"/>
  </bean>

  <!--Ambra developer beans here -->
  <bean id="configurationStore" class="org.topazproject.ambra.configuration.ConfigurationStore" factory-method="getInstance"/>
  <bean id="ambraConfiguration" factory-bean="configurationStore" factory-method="getConfiguration"/>

  <bean id="fetchArticleService" class="org.topazproject.ambra.article.service.FetchArticleService">
    <property name="articleService" ref="articleOtmService"/>
  </bean>

  <bean id="trackBackService" class="org.topazproject.ambra.article.service.TrackbackService" />

  <bean id="articleXmlUtils" class="org.topazproject.ambra.util.ArticleXMLUtils" init-method="init">
    <property name="articleRep" value="XML"/>
    <property name="xslTemplate" value="/viewnlm-v2.xsl"/>
    <property name="xmlFactoryProperty" ref="xmlFactoryProperties"/>
    <property name="articleService" ref="articleOtmService"/>
  </bean>

  <bean id="secondaryObjectService" class="org.topazproject.ambra.util.ArticleXMLUtils" init-method="init">
    <property name="articleRep" value="XML"/>
    <property name="xslTemplate" value="/objInfo.xsl"/>
    <property name="xmlFactoryProperty" ref="xmlFactoryProperties"/>
    <property name="articleService" ref="articleOtmService"/>
  </bean>

  <util:map id="xmlFactoryProperties">
    <entry key="javax.xml.transform.TransformerFactory"
           value="net.sf.saxon.TransformerFactoryImpl"/>
    <entry key="javax.xml.transform.Transformer"
           value="net.sf.saxon.Controller"/>
  </util:map>

  <!-- TODO: Update the servicePort url's automatically using maven build process itself-->
  <bean id="articleOtmService" class="org.topazproject.ambra.article.service.ArticleOtmService">
    <property name="smallImageRep" value="PNG_S"/>
    <property name="mediumImageRep" value="PNG_M"/>
    <property name="largeImageRep" value="PNG_L"/>
   </bean>

  <bean id="feedService" class="org.topazproject.ambra.feed.service.FeedService">
    <property name="articleOtmService" ref="articleOtmService"/>
    <property name="annotationService" ref="annotationService"/>
    <property name="journalService" ref="journalService"/>
    <property name="feedCache" ref="feedCache"/>
    <property name="otmSession" ref="otmSession"/>
    <property name="browseService" ref="browseService"/>
   </bean>

   <bean id="adminService" class="org.topazproject.ambra.admin.service.AdminService">
    <property name="journalService" ref="journalService"/>
    <property name="otmSession" ref="otmSession"/>
   </bean>

   <bean id="crossRefPosterService" class="org.topazproject.ambra.admin.service.CrossRefPosterService">
    <!-- following is the URL for the CrossRef service. The three parameters which should be set are
        * area=  test or live. Decides if the cross ref is actually 'posted'. area=test for testing, area=live for deployment
        * login_id=crossref user name
        * login_passwd=crossref user password
    -->
    <property name="doiXrefUrl" value="${ambra.services.crossref.post.url}"/>
  </bean>

  <bean id="flagManagementService" class="org.topazproject.ambra.admin.service.FlagManagementService"/>

  <bean id="documentManagementService" class="org.topazproject.ambra.admin.service.DocumentManagementService">
    <!-- These pathnames are absolute -->
    <property name="documentDirectory" value="${ambra.services.documentManagement.ingestSourceDir}"/>
    <property name="ingestedDocumentDirectory" value="${ambra.services.documentManagement.ingestDestinationDir}"/>
    <property name="documentPrefix" value="${ambra.services.documentManagement.documentPrefix}"/>
    <!-- Whereas this is relative to webapp/src/main/resources  -->
    <property name="xslTemplate" value="/crossref.xsl"/>
    <property name="plosDoiUrl" value="${ambra.services.crossref.plos.doiurl}"/>
    <property name="plosEmail" value="${ambra.services.crossref.plos.email}"/>
    <property name="sendToXref" value="${ambra.services.crossref.sendToXref}"/>
  </bean>

  <!-- Warning. Spring does not autowire 'simple' properties like primitives, Strings and Classes -->
  <bean id="defaultEncodingCharset" class="java.lang.String">
    <constructor-arg value="UTF-8"/>
  </bean>

  <bean id="applicationId" class="java.lang.String">
    <constructor-arg value="topaz-ambra"/>
  </bean>

  <bean id="impliedPermissionsLoader" init-method="load" 
     class="org.topazproject.ambra.permission.service.ImpliedPermissionsLoader"/> 

  <bean id="permissionsService" depends-on="impliedPermissionsLoader" 
     class="org.topazproject.ambra.permission.service.PermissionsService"/>

  <bean id="annotationConverter" class="org.topazproject.ambra.annotation.service.AnnotationConverter"/>

  <bean id="replyService" class="org.topazproject.ambra.annotation.service.ReplyService">
    <property name="encodingCharset" ref="defaultEncodingCharset"/>
    <property name="defaultType" value="http://www.w3.org/2001/12/replyType#Comment"/>
    <property name="applicationId" ref="applicationId"/>
  </bean>

  <bean id="annotationService" class="org.topazproject.ambra.annotation.service.AnnotationService">
    <property name="encodingCharset" ref="defaultEncodingCharset"/>
    <property name="applicationId" ref="applicationId"/>
  </bean>

  <bean id="ratingsService" class="org.topazproject.ambra.rating.service.RatingsService">
    <property name="applicationId" ref="applicationId"/>
  </bean>

  <bean id="userService" class="org.topazproject.ambra.user.service.UserService">
    <property name="emailAddressUrl" value="${ambra.services.cas.url.base}/email?guid="/>
    <property name="applicationId"  ref="applicationId"/>
  </bean>

  <bean id="profanityCheckingService" class="org.topazproject.ambra.util.ProfanityCheckingService"/>

  <bean id="browseService" class="org.topazproject.ambra.article.service.BrowseService">
    <property name="journalService" ref="journalService"/>
    <property name="browseCache" ref="browseCache"/>
    <property name="otmSession" ref="otmSession"/>
  </bean>

  <bean id="smallBlobService" class="org.topazproject.ambra.article.service.SmallBlobService"/>
  
  <!-- Add all your constants to the map with a key and a value/ref -->
  <util:map id="otherConstants" map-class="java.util.HashMap">
    <entry key="countries" value-ref="countries"/>
  </util:map>

  <bean id="searchService" class="org.topazproject.ambra.search.service.SearchService"/>

  <bean id="journalCreator" class="org.topazproject.ambra.journal.JournalCreator"
      init-method="createJournals"/>

  <bean id="journalService" class="org.topazproject.ambra.journal.JournalService" 
      depends-on="journalCreator" init-method="init"/>
  
  <bean id="bootstrapMigrator" class="org.topazproject.ambra.migration.BootstrapMigrator"
      init-method="migrate"/>
  
  <bean id="citationMigrator" class="org.topazproject.ambra.migration.CitationMigrator"
      init-method="init">
    <!-- background: set to true to allow web-traffic during migrations -->
    <property name="background" value="true"/> 
    <!-- txnTimeout: the txn timeout in seconds -->
    <property name="txnTimeout" value="600"/> 
    <!-- blobThrottle: number of articles to migrate per transaction -->
    <property name="blobThrottle" value="20"/> 
  </bean>
  
  <bean id="searchMigrator" class="org.topazproject.ambra.migration.SearchMigrator"
      init-method="init">
    <!-- reIndex: set to true to re-build search-index. Will re-build all indexes even if
         all search-migrations were completed and 'finalized'. -->
    <property name="reIndex" value="false"/>      
    <!-- finalize: set to 'true' to write a marker on success to denote completion of all migrations.
         Setting to 'false' is really for running a migration elsewhere and copy the data to a 
         real instance. For everywhere else the recommendation is to set this to 'true'.
    -->
    <property name="finalize" value="true"/> 
    <!-- background: set to true to allow web-traffic during migrations -->
    <property name="background" value="true"/> 
    <!-- txnTimeout: the txn timeout in seconds -->
    <property name="txnTimeout" value="1800"/> 
    <!-- blobThrottle: number of blobs to index per transaction -->
    <property name="blobThrottle" value="20"/> 
    <!-- rdfThrottle: number of mulgara only entity instances (eg. Citation) to index per transaction -->
    <property name="rdfThrottle" value="3000"/> 
  </bean>
  
  <!-- OTM setups -->
  <bean name="fedoraBlobStore" class="org.topazproject.fedora.otm.FedoraBlobStore" lazy-init="true">
    <constructor-arg index="0" value="${ambra.topaz.blobStore.fedora.uri}"/>
    <constructor-arg index="1" value="${ambra.topaz.blobStore.fedora.userName}"/>
    <constructor-arg index="2" value="${ambra.topaz.blobStore.fedora.password}"/>
  </bean>
  <bean name="simpleBlobStore" class="org.topazproject.otm.stores.SimpleBlobStore" lazy-init="true">
    <constructor-arg index="0" value="${ambra.topaz.blobStore.simple.directory}"/>
  </bean>

  <bean id="jtaTransactionManager" class="org.topazproject.otm.impl.btm.TransactionManagerHelper"
        factory-method="getTransactionManager"/>

  <bean id="otmFactory" class="org.topazproject.ambra.configuration.OtmConfiguration"
      destroy-method="close" depends-on="bootstrapMigrator">
    <constructor-arg index="0" value="${ambra.topaz.tripleStore.mulgara.itql.uri}"/>
    <!-- must be one of fedoraBlobStore or simpleBlobStore -->
    <constructor-arg index="1" ref="${ambra.topaz.blobStore.beanName}"/>
    <property name="fedoraBlobFactories">
      <list>
        <bean name="annotationFedoraBlobFactory"
            class="org.topazproject.ambra.models.support.fedora.AnnotationFedoraBlobFactory">
          <constructor-arg index="0" value="${ambra.topaz.blobStore.fedora.blobTypes.annotation.pidNs}"/>
          <constructor-arg index="1" value="${ambra.topaz.blobStore.fedora.blobTypes.annotation.uriPrefix}"/>
        </bean>
        <bean name="representationFedoraBlobFactory"
            class="org.topazproject.ambra.models.support.fedora.RepresentationFedoraBlobFactory">
          <constructor-arg index="0" value="${ambra.topaz.blobStore.fedora.blobTypes.representation.pidNs}"/>
          <constructor-arg index="1" value="${ambra.topaz.blobStore.fedora.blobTypes.representation.uriPrefix}"/>
        </bean>
      </list>
    </property>

    <property name="aliases">
      <map>
        <entry key="id" value="${ambra.aliases.id}"/>
        <entry key="annoteaBodyId" value="${ambra.aliases.annoteaBodyId}"/>
      </map>
    </property>

    <property name="preloadClasses">
      <list>
        <value>org.topazproject.ambra.model.article.CitationInfo</value>
        <value>org.topazproject.ambra.model.UserProfileInfo</value>
        <value>org.topazproject.ambra.model.article.ArticleInfo</value>
        <value>org.topazproject.ambra.model.article.NewArtInfo</value>
        <value>org.topazproject.ambra.model.article.RelatedArticleInfo</value>
      </list>
    </property>
  </bean>

  <bean id="otmSessionFactory" factory-bean="otmFactory" factory-method="getFactory"/>

  <bean id="otmSession" factory-bean="otmSessionFactory" factory-method="openSession"
      destroy-method="close" scope="request">
    <constructor-arg index="0" ref="otmInterceptor"/>
    <aop:scoped-proxy proxy-target-class="false"/>
  </bean>

  <!-- Set up Transaction-Manager stuff -->
  <bean id="txManager" class="org.topazproject.otm.spring.OtmTransactionManager">
    <property name="defaultTimeout" value="600"/>
    <property name="clearSessionOnRollback" value="true"/>
    <property name="skipFlushOnReadonlyTx" value="true"/>
  </bean>

  <tx:annotation-driven transaction-manager="txManager" proxy-target-class="true"/>

  <aop:config proxy-target-class="true">
    <aop:advisor
        pointcut="execution(* org.topazproject.ambra.admin.service.DocumentManagementService.ingest(..))"
        advice-ref="longTxTimeout" order="1"/>
  </aop:config>

  <tx:advice id="longTxTimeout" transaction-manager="txManager">
    <tx:attributes>
      <tx:method name="*" timeout="1800" rollback-for="java.lang.Throwable"/>
    </tx:attributes>
  </tx:advice>

  <!-- cache manager configs -->
  <bean id="txCacheManager" class="org.topazproject.ambra.cache.CacheManager">
    <constructor-arg index="0" ref="jtaTransactionManager"/>
  </bean>
  <bean id="objectCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="objectEhcache"/>
  </bean>
  <bean id="smallBlobCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="smallBlobEhcache"/>
  </bean>
  <bean id="otmInterceptor" class="org.topazproject.ambra.cache.OtmInterceptor">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="objectCache"/>
    <constructor-arg index="2" ref="journalService"/>
  </bean>
  <bean id="browseCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="browseEhcache"/>
  </bean>
  <bean id="userCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="userEhcache"/>
  </bean>
  <bean id="feedCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="feedEhcache"/>
  </bean>
  <bean id="searchCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="searchEhcache"/>
  </bean>
  <bean id="articleAnnotationCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="articleAnnotationEhcache"/>
  </bean>
  <bean id="journalCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="journalEhcache"/>
  </bean>
  <bean id="carrierCache" class="org.topazproject.ambra.cache.EhcacheProvider">
    <constructor-arg index="0" ref="txCacheManager"/>
    <constructor-arg index="1" ref="carrierEhcache"/>
  </bean>

  <!-- freemarker configs -->
  <bean id="ambraFreemarkerManager" class="org.topazproject.ambra.struts2.AmbraFreemarkerManager">
    <constructor-arg index="0" ref="ambraFreemarkerConfig"/>
  </bean>

  <bean id="ambraFreemarkerConfig" class="org.topazproject.ambra.struts2.AmbraFreemarkerConfig"/>

  <!-- Caches -->
  <bean id="cacheManager" class="org.springframework.cache.ehcache.EhCacheManagerFactoryBean">
    <property name="configLocation" value="classpath:ehcache.xml"/>
    <property name="shared" value="true"/>
  </bean>

  <bean id="journalEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="Journals"/>
  </bean>

  <bean id="carrierEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="ArticleCarriers"/>
  </bean>

  <bean id="articleAnnotationEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="ArticleAnnotationCache"/>
  </bean>

  <bean id="userEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="UserCache"/>
  </bean>

  <bean id="browseEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="BrowseCache"/>
  </bean>

  <bean id="feedEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="FeedCache"/>
  </bean>

  <bean id="searchEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="SearchCache"/>
  </bean>

  <bean id="objectEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="ObjectCache"/>
  </bean>

  <bean id="smallBlobEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="SmallBlobCache"/>
  </bean>

  <bean id="grantsEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="permission-grants"/>
  </bean>

  <bean id="revokesEhcache" class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="permission-revokes"/>
  </bean>


  <bean id="virtualJournalMappingFilterCache"
    class="org.springframework.cache.ehcache.EhCacheFactoryBean">
    <property name="cacheName" value="VirtualJournalMappingFilter"/>
  </bean>

  <!-- JMX exporting -->
  <bean id="mbeanServer" class="org.springframework.jmx.support.MBeanServerFactoryBean">
    <property name="locateExistingServerIfPossible" value="true"/>
  </bean>

  <bean class="org.springframework.beans.factory.config.MethodInvokingFactoryBean">
    <property name="staticMethod"
        value="net.sf.ehcache.management.ManagementService.registerMBeans"/>
    <property name="arguments">
      <list>
        <ref bean="cacheManager"/>
        <ref bean="mbeanServer"/>
        <value>true</value>
        <value>true</value>
        <value>true</value>
        <value>true</value>
      </list>
    </property>
  </bean>

  <bean class="org.springframework.jmx.export.MBeanExporter" lazy-init="false">
    <property name="autodetect" value="true"/>
  </bean>

  <bean name="org.topazproject.ambra.logging:name=log4j" class="org.apache.log4j.jmx.HierarchyDynamicMBean"/>

  <!-- email configuration -->
  <bean id="mailSender" class="org.springframework.mail.javamail.JavaMailSenderImpl">
    <property name="host" value="${ambra.network.hosts.mailhost}"/>
  </bean>

  <bean id="freemarkerConfig" class="org.springframework.web.servlet.view.freemarker.FreeMarkerConfigurer">
    <property name="templateLoaderPath" value="/WEB-INF/emailTemplates/"/>
    <property name="defaultEncoding" ref="defaultEncodingCharset"/>
  </bean>

  <bean id="ambraMailer" class="org.topazproject.ambra.service.AmbraMailer">
    <property name="fromEmailAddress" value="application@plosone.org"/>
    <property name="feedbackEmailMap">
      <map>
        <entry key="text" value="feedback-text.ftl"/>
        <entry key="html" value="feedback-html.ftl"/>
        <entry key="subject" value="My feedback for PLoS ONE"/>
        <entry key="toEmailAddress" value="${ambra.platform.email.feedback}"/>
      </map>
    </property>
    <property name="emailThisArticleMap">
      <map>
        <entry key="text" value="emailThisArticle-text.ftl"/>
        <entry key="html" value="emailThisArticle-html.ftl"/>
        <entry key="url" value="${ambra.services.crossref.plos.doiurl}"/>
        <entry key="subject" value="An Article from "/>
      </map>
    </property>
  </bean>

</beans>